skills/scanpy/scripts/_common.py

• info · function · L16-L18 — def info(msg)
• die · function · L21-L24 — def die(msg, code=1)
• _import_scanpy · function · L27-L32 — def _import_scanpy()
• configure_scanpy · function · L35-L50 — def configure_scanpy(figdir="figures", dpi=120, verbosity=1, autosave=False, file_format="png")
• load_anndata · function · L53-L85 — def load_anndata(path, var_names="gene_symbols")
• save_anndata · function · L88-L93 — def save_anndata(adata, path)
• add_io_args · function · L96-L104 — def add_io_args(parser, default_output=None)
• _named_keys · function · L107-L113 — def _named_keys(mapping)
• summarize · function · L116-L127 — def summarize(adata)