skills/bulk-rnaseq/scripts/build_counts_matrix.py

• _clean_sample_name · function · L41-L53 — def _clean_sample_name(name: str) -> str
• build_from_salmon · function · L56-L98 — def build_from_salmon(quant_dir: Path, tx2gene: Path) -> pd.DataFrame
• build_from_star · function · L101-L118 — def build_from_star(quant_dir: Path, strandedness: str) -> pd.DataFrame
• build_from_featurecounts · function · L121-L136 — def build_from_featurecounts(counts_file: Path) -> pd.DataFrame
• write_outputs · function · L139-L162 — def write_outputs(counts: pd.DataFrame, output_dir: Path) -> None
• main · function · L165-L199 — def main() -> None