skills/bioservices/scripts/pathway_analysis.py

• get_all_pathways · function · L34-L43 — def get_all_pathways(kegg, organism)
• analyze_pathway · function · L46-L86 — def analyze_pathway(kegg, pathway_id)
• analyze_all_pathways · function · L89-L107 — def analyze_all_pathways(kegg, pathway_ids, limit=None)
• save_pathway_summary · function · L110-L147 — def save_pathway_summary(results, output_file)
• save_interactions_sif · function · L150-L166 — def save_interactions_sif(results, output_file)
• save_detailed_pathway_info · function · L169-L192 — def save_detailed_pathway_info(results, output_dir)
• print_statistics · function · L195-L234 — def print_statistics(results)
• main · function · L237-L305 — def main()