skills/alphagenome/scripts/atlas_link.py

• parse_modalities · function · L63-L75 — def parse_modalities(text: str | Sequence[str] | None) -> list[str]
• build_filter · function · L78-L107 — def build_filter( biosample: str | None = None, modalities: Sequence[str] = (), tfs: Sequence[str] = (), histone_marks: Sequence[str] = (), ) -> str | None
• build_layout · function · L110-L113 — def build_layout(include_avi: bool = True, modalities: Sequence[str] = ()) -> str
• build_url · function · L116-L156 — def build_url( mode: str, query: str, *, biosample: str | None = None, modalities: Sequence[str] = DEFAULT_MODALITIES, tfs: Sequence[str] = (), histone_marks: Sequence[str] = (), include_avi: bool = True, zoom: str | None = None, ) -> str
• build_parser · function · L159-L175 — def build_parser() -> argparse.ArgumentParser
• main · function · L178-L198 — def main(argv: Sequence[str] | None = None) -> int