skills/bioskills/bio-systems-biology-model-curation/scripts/model_curation.py

• energy_generating_cycles · function · L25-L44 — def energy_generating_cycles(model, dissipations=DISSIPATION)
• imbalance · function · L47-L57 — def imbalance(reaction)
• unbalanced_reactions · function · L60-L70 — def unbalanced_reactions(model): # exchange/demand/sink and the biomass pseudo-reaction are intentionally unbalanced -> skip them
• dead_ends · function · L73-L80 — def dead_ends(model)
• main · function · L83-L105 — def main(): # memote (consistency + annotation score) is a CLI step: # memote report snapshot model.xml --filename report.html # The score measures well-formedness, NOT biological correctness; read which tests fail.