skills/bioskills/bio-structural-biology-structure-validation/scripts/validate_structure.py

• read_refinement_metadata · function · L23-L35 — def read_refinement_metadata(cif_path)
• first · function · L25-L30 — def first(key)
• bfactor_outliers · function · L38-L42 — def bfactor_outliers(structure, chain_id)
• is_rama_allowed · function · L45-L47 — def is_rama_allowed(phi, psi)
• geometry_flags · function · L50-L61 — def geometry_flags(structure)
• validate · function · L64-L70 — def validate(path, chain_id, is_cif=True)