skills/bioskills/bio-small-rna-seq-target-prediction/scripts/predict_targets.py

• find_seed_matches · function · L7-L45 — def find_seed_matches(mirna_seq, utr_seq, seed_type='7mer-m8')
• parse_miranda_output · function · L47-L74 — def parse_miranda_output(filepath)
• load_targetscan · function · L76-L87 — def load_targetscan(filepath, mirbase_id)
• load_mirdb · function · L89-L100 — def load_mirdb(filepath, mirna_id, score_threshold=80)
• find_consensus_targets · function · L102-L126 — def find_consensus_targets(miranda_targets, targetscan_targets, mirdb_targets, min_databases=2)