skills/bioskills/bio-small-rna-seq-mirge3-analysis/scripts/mirge3_quantify.py

• run_mirge3 · function · L8-L36 — def run_mirge3(samples, output_dir, lib_path='/path/to/miRge3_Lib', organism='human', db='miRBase', adapter='illumina', threads=8)
• load_mirge3_results · function · L38-L61 — def load_mirge3_results(output_dir)
• filter_and_normalize · function · L63-L84 — def filter_and_normalize(counts, min_total=10)
• summarize_isomirs · function · L86-L110 — def summarize_isomirs(isomir_counts)