skills/bioskills/bio-sequence-io-paired-end-fastq/scripts/paired_end_io.py

• opener · function · L15-L19 — def opener(path, mode)
• mate_key · function · L21-L23 — def mate_key(record)
• parse_paired · function · L25-L30 — def parse_paired(r1_path, r2_path)
• mean_quality · function · L32-L33 — def mean_quality(record)
• filter_pairs_synced · function · L35-L55 — def filter_pairs_synced(r1_in, r2_in, r1_out, r2_out, r1_orphan, r2_orphan, min_qual=25)
• interleave_pairs · function · L57-L63 — def interleave_pairs(r1_in, r2_in, out_path)
• records · function · L58-L61 — def records()
• deinterleave · function · L65-L74 — def deinterleave(in_path, r1_out, r2_out)
• _make_record · function · L76-L79 — def _make_record(name, seq, qual)
• _demo · function · L81-L105 — def _demo()