skills/bioskills/bio-ribo-seq-translation-efficiency/scripts/calculate_te.py

• normalize_tpm · function · L17-L20 — def normalize_tpm(counts, cds_lengths)
• log2_te · function · L23-L27 — def log2_te(ribo_counts, rna_counts, cds_lengths)
• rank_te_change · function · L30-L56 — def rank_te_change(te_matrix, conditions)