skills/bioskills/bio-ribo-seq-ribosome-stalling/scripts/detect_stalling.py

• pause_scores · function · L19-L33 — def pause_scores(per_codon_occupancy, min_total=MIN_TOTAL, threshold=SCORE_THRESHOLD)
• codon_occupancy · function · L36-L51 — def codon_occupancy(per_codon_occupancy, codon_seqs)
• _simulate · function · L54-L64 — def _simulate(n_tx=50, n_codons=200, depth=8, seed=0)