skills/bioskills/bio-ribo-seq-ribosome-periodicity/scripts/periodicity_analysis.py

• body_frame_fraction · function · L24-L29 — def body_frame_fraction(psite_coverage, trim_start=TRIM_START_NT, trim_stop=TRIM_STOP_NT)
• period3_power · function · L32-L44 — def period3_power(psite_coverage, trim_start=TRIM_START_NT, trim_stop=TRIM_STOP_NT)
• classify · function · L47-L52 — def classify(frame0_fraction)
• _simulate_cds · function · L55-L67 — def _simulate_cds(n_codons=300, frame0_weight=0.75, depth=40, seed=0)