skills/bioskills/bio-proteomics-data-import/scripts/load_maxquant.py

• make_demo_protein_groups · function · L11-L24 — def make_demo_protein_groups(path): # 10 real proteins spanning ~3 logs; below ~1e7 the protein falls under detection in S2, # so missingness is concentrated in the LOW-abundance proteins -- the left-censored MNAR signature.
• load_clean_maxquant · function · L26-L40 — def load_clean_maxquant(path)
• assess_missingness · function · L42-L46 — def assess_missingness(matrix, sample_cols)