skills/bioskills/bio-phylogenetics-bayesian-inference/scripts/bayesian_convergence.py

• parse_mrbayes_pfile · function · L13-L27 — def parse_mrbayes_pfile(filepath)
• compute_ess · function · L30-L48 — def compute_ess(series)
• compute_psrf · function · L51-L63 — def compute_psrf(series1, series2)
• assess_convergence · function · L66-L112 — def assess_convergence(pfile_run1, pfile_run2, burnin_fraction=0.25)
• write_synthetic_pfiles · function · L115-L131 — def write_synthetic_pfiles(outdir)