skills/bioskills/bio-phasing-imputation-imputation-qc/scripts/imputation_qc.py

• detect_qual_key · function · L13-L18 — def detect_qual_key(vcf)
• quality_by_maf · function · L20-L37 — def quality_by_maf(vcf_path, cutoff=0.3)
• dosage_r2_by_maf · function · L39-L60 — def dosage_r2_by_maf(imputed_path, truth_path)