skills/bioskills/bio-liquid-biopsy-fragment-analysis/scripts/fragment_analysis.py

• fragment_metrics · function · L23-L35 — def fragment_metrics(bam_path)
• binned_short_long_ratio · function · L38-L65 — def binned_short_long_ratio(bam_path, bin_size=DEFAULT_BIN, chroms=None)
• size_selected_metrics · function · L68-L77 — def size_selected_metrics(bam_path, lo=90, hi=150)
• compare_to_reference · function · L80-L86 — def compare_to_reference(sample_profile, reference_profile)
• plot_genome_profile · function · L89-L107 — def plot_genome_profile(profile_df, output_file)