skills/bioskills/bio-liquid-biopsy-analytical-validation/scripts/detection_limits.py

• genome_equivalents · function · L15-L16 — def genome_equivalents(input_ng)
• detection_probability · function · L19-L22 — def detection_probability(input_ng, vaf, min_mutant_molecules=1)
• ge_for_sampling_detection · function · L25-L27 — def ge_for_sampling_detection(vaf, target_lambda=3.0)
• limit_of_blank · function · L30-L33 — def limit_of_blank(blank_signals)
• lod95_probit · function · L36-L46 — def lod95_probit(vaf_levels, detected)
• panel_detection_probability · function · L49-L52 — def panel_detection_probability(input_ng, vaf, n_loci, min_loci_positive=2)
• simulate_dilution_series · function · L55-L64 — def simulate_dilution_series(true_lod_vaf, input_ng, levels, replicates, seed=0)
• main · function · L67-L83 — def main()