skills/bioskills/bio-immunoinformatics-neoantigen-prediction/scripts/neoantigen_prediction.py

• drop_lost_alleles · function · L14-L18 — def drop_lost_alleles(df, lost_alleles, allele_col='HLA Allele')
• add_quality · function · L21-L27 — def add_quality(df, wt='Median WT IC50 Score', mt='Median MT IC50 Score')
• add_ccf · function · L30-L37 — def add_ccf(df, purity, vaf_col='Tumor DNA VAF', cn_col='Local Copy Number')
• prioritize · function · L40-L50 — def prioritize(df)