skills/bioskills/bio-imaging-mass-cytometry-spatial-analysis/scripts/spatial_analysis.py

• pruned_contact_graph · function · L19-L27 — def pruned_contact_graph(sub, max_um=30.0): # Delaunay approximates physical adjacency, but invents long edges across lumen/necrosis; # prune anything longer than a biological contact distance
• cellular_neighborhoods · function · L36-L41 — def cellular_neighborhoods(adata, k_window, n_cn=10)