skills/bioskills/bio-genome-annotation-repeat-annotation/scripts/repeat_stats.py

• parse_repeatmasker_out · function · L12-L40 — def parse_repeatmasker_out(out_file)
• genome_size_from_fasta · function · L43-L44 — def genome_size_from_fasta(fasta_file)
• repeat_summary · function · L47-L67 — def repeat_summary(rm_df, genome_size)
• repeat_landscape · function · L70-L99 — def repeat_landscape(rm_df, output_file='repeat_landscape.png')
• repeat_size_distribution · function · L102-L115 — def repeat_size_distribution(rm_df, output_file='repeat_sizes.png')