skills/bioskills/bio-genome-annotation-prokaryotic-annotation/scripts/parse_annotation.py

• load_gff_database · function · L13-L15 — def load_gff_database(gff_file)
• extract_cds_info · function · L18-L31 — def extract_cds_info(db)
• compute_coding_density · function · L34-L43 — def compute_coding_density(db, genome_fasta)
• feature_summary · function · L46-L52 — def feature_summary(db)
• annotation_qc_report · function · L55-L84 — def annotation_qc_report(gff_file, genome_fasta)