skills/bioskills/bio-crispr-screens-jacks-analysis/scripts/run_jacks.py

• prepare_input_files · function · L14-L28 — def prepare_input_files(counts_file, output_prefix)
• run_jacks_analysis · function · L30-L47 — def run_jacks_analysis(counts_file, guidemap_file, replicatemap_file, output_prefix, ctrl_condition='Day0', treatment_condition='Day14')
• analyze_results · function · L49-L78 — def analyze_results(gene_results_file, guide_results_file)
• plot_results · function · L80-L108 — def plot_results(genes, guides, output_prefix)