skills/bioskills/bio-clinical-databases-gnomad-frequencies/scripts/gnomad_query.py

• query_variant_v4 · function · L15-L49 — def query_variant_v4(chrom, pos, ref, alt)
• grpmax_faf95 · function · L52-L76 — def grpmax_faf95(payload)
• max_credible_af · function · L79-L92 — def max_credible_af(prevalence, max_allelic_contribution=1.0, max_genetic_contribution=1.0, penetrance=1.0)
• apply_acmg_freq_codes · function · L95-L109 — def apply_acmg_freq_codes(faf95_val, max_credible, ba1_threshold=0.05)
• query_gene_constraint_v4 · function · L112-L141 — def query_gene_constraint_v4(gene_symbol)
• annotate_variant_list · function · L144-L160 — def annotate_variant_list(variants)
• hail_bulk_filter_snippet · function · L163-L184 — def hail_bulk_filter_snippet()