skills/bioskills/bio-chip-seq-chipseq-qc/scripts/chipseq_qc.py

• calculate_frip · function · L14-L27 — def calculate_frip(bam_file, peak_file)
• calculate_complexity · function · L30-L55 — def calculate_complexity(bam_file)
• fragment_size_diagnostic · function · L58-L98 — def fragment_size_diagnostic(bam_file, max_size=1000)
• hyper_chipable_check · function · L101-L135 — def hyper_chipable_check(peak_file, input_bigwig_summary_tsv, top_pct=1.0)
• grade · function · L138-L160 — def grade(metrics, mark_type='tf')