skills/bioskills/bio-atac-seq-co-accessibility/scripts/cicero_workflow.R

• run_cicero_pipeline · function · L11-L76 — function(peak_matrix, peak_metadata, cell_metadata, output_prefix='cicero', k_metacell=50, window=500000, coaccess_threshold=0.25, tss_bed='gencode_v29_protein_coding_tss.bed', tss_pad=2000)