skills/bioskills/bio-alternative-splicing-splicing-quantification/scripts/quantify_splicing.py

• run_suppa2_quantification · function · L13-L55 — def run_suppa2_quantification(gtf_file, tpm_file, output_prefix, event_types=None)
• filter_reliable_events · function · L58-L82 — def filter_reliable_events(psi_file, min_samples_with_coverage=0.5)
• parse_rmats_output · function · L85-L123 — def parse_rmats_output(rmats_dir, event_type='SE', min_junction_reads=20)
• parse_inc_levels · function · L101-L106 — def parse_inc_levels(row)