skills/bioskills/bio-alternative-splicing-splice-variant-prediction/scripts/spliceai_clingen_classify.py

• run_spliceai · function · L19-L26 — def run_spliceai(input_vcf, output_vcf, genome_fa, build='grch38', distance=50, mask=0)
• parse_spliceai_vcf · function · L29-L52 — def parse_spliceai_vcf(vcf_path)
• apply_clingen_svi · function · L55-L66 — def apply_clingen_svi(df)
• flag_deep_intronic_candidates · function · L69-L73 — def flag_deep_intronic_candidates(df, threshold=0.05)
• main · function · L76-L113 — def main()