skills/bioskills/bio-alternative-splicing-sashimi-plots/scripts/plot_sashimi.py

• create_grouping_file · function · L14-L32 — def create_grouping_file(bam_files, conditions, output_file)
• plot_sashimi · function · L35-L70 — def plot_sashimi(grouping_file, region, output_prefix, gtf_file, options=None)
• batch_plot_rmats_events · function · L73-L121 — def batch_plot_rmats_events(rmats_file, grouping_file, gtf_file, output_dir, n_top=20, fdr_cutoff=0.05, dpsi_cutoff=0.1)
• plot_specific_event · function · L124-L151 — def plot_specific_event(grouping_file, gtf_file, chrom, start, end, output_prefix, gene_name=None, flank=500)