skills/bioskills/bio-alignment-structural-alignment/scripts/foldseek_search.py

• foldseek_search · function · L14-L21 — def foldseek_search(query_pdb, database, output_m8, tmp_dir='tmp/', alignment_type=2, max_seqs=200)
• parse_results · function · L23-L37 — def parse_results(output_m8)