skills/bioskills/bio-alignment-alignment-trimming/scripts/clipkit_trim.py

• run_clipkit · function · L14-L20 — def run_clipkit(input_fasta, output_fasta, mode='kpic-smart-gap', gap_threshold=None, log=True)
• trimming_summary · function · L22-L31 — def trimming_summary(input_fasta, output_fasta)