# phylo — phylogenetics / bioinformatics (Python 3.11)
#
# Derived from all_env_packages.csv. Lists the headline scientific packages
# only; conda resolves the full dependency tree (system libs, fonts, blas, …).
# Versions match the CSV where they are meaningful top-level packages.
name: phylo
channels:
  - conda-forge
  - bioconda
dependencies:
  - python=3.11
  # sequence / tree tooling
  - biopython=1.87
  - dendropy=5.0.8
  - ete3=3.1.3
  - logomaker=0.8.6
  # alignment + tree-building CLIs (bioconda)
  - mafft=7.526
  - iqtree=3.1.2
  - fasttree=2.2.0
  - trimal=1.5.1
  # general scientific stack
  - numpy
  - pandas
  - scipy
  - matplotlib
  - seaborn
  - statsmodels
  - lxml
  - requests